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Partition programs

cfdisk - curses-based disk partition table manipulator
fdisk - partition table manipulator
gdisk - text-mode partitioning tool that works on GPT disks
gpart - guess PC-type hard disk partitions
GParted - partition editor that uses libparted
parted - partition manipulation program
sfdisk - partition table manipulator

File System Tools

btrfs - btrfs is a new copy on write file system for Linux
Bonnie++ - benchmark suite aimed at performing a number of simple tests
curlftpfs - file system for accessing FTP hosts based on FUSE and libcurl
dbench - file system benchmark
diskdev_cmds - OSX-ported, HFS+ utilities supplying mkfs and fsck
dosfstools - utilities to create and check MS-DOS FAT file systems
e2fsprogs - ext2 file system utilities and libraries
EncFS - provides an encrypted file system in userspace
fsarchiver - save contents of a file system to a compressed archive file
FUSE - file system in userspace
hfsplus - set of tools to access HFS+ file systems
IOzone - file system benchmark tool
ntfs-3g - third generation NTFS driver
ntfsprogs - tools for doing neat things with NTFS
reiser4progs - administration utilities for Reiser4 file systems
reiserfsprogs - user-level tools for ReiserFS file systems
sshfs - file system client based on SSH
vmfs-tools - access VMFS through standard Linux VFS via FUSE
xfsprogs - utilities for managing XFS file systems

Booting Loader Tools

grub - GRand Unified Bootloader
HDT (Hardware Detection Tool) - Syslinux com32 hardware analyzer module
install-mbr - installs and configures a Master Boot Record manager
lilo - LInux LOader
Memtest86+ - advanced memory diagnostic tool
ms-sys - used to create Microsoft-compatible boot records
syslinux - bootloaders for FAT12/16/32, bootable “El Torito” (iso9660), ext2/3/4 and brtfs file systems

X Utilities

Firefox - open source web browser
Conky - lightweight system monitor
emelFM2 - GTK+2 port of file manager emelFM
ePDFView - lightweight PDF document viewer
File Roller - archive manager
galculator - GTK+ scientific calculator
GEncFS - GUI to EncFS, for encrypted directory mounting
GPicView - GTK+ image viewer
gtk-lshw - GTK+ front-end for lshw
GSmartControl - HDD health inspection tool (GUI for smartctl)
GSSHFS - GUI to SSHFS, for distant directory over SSH mounting
hardinfo - system profiler and benchmark
ISO Master - GUI CD image editor
Mount-gtk - front end for pmount
Leafpad - GTK+ based simple text editor
LXMusic - minimalist music player for LXDE
LXTerminal - VTE-based terminal emulator for LXDE
PCman FM - file manager
SimpleBurn - CD burning GUI
TrueCrypt - software system for on-the-fly-encrypted volumes
UNetbootin - create bootable, Live USB drives for Linux distros without burning a CD
XChat - IRC chat program

Console Utilities

BlueZ - official Linux Bluetooth protocol stack
bzip2recover - recover data from damaged bz2 files
cdrtools - allows recording to CD/DVD/BluRay media
chntpw - utility to (re)set passwords of local accounts on Windows systems
cmospwd - decrypts passwords stored in CMOS used to access BIOS setup
ClamAV - open source (GPL) anti-virus toolkit for UNIX
Clonezilla - OpenSource clone system
cURL - tool for transferring files with URL syntax
dcfldd - enhanced version of GNU dd
dc3dd - patched version of GNU dd
dd - convert and copy a file
ddrescue - does not abort on errors on the input file
device-mapper - kernel component that supports LVM
di - disk information utility
diff - compares two files, showing differences line by line
disktype - detect content format of disk or disk image
dmidecode - reports information about your system's hardware
dmraid - discover and activate software (ATA)RAID
DRBL - Diskless Remote Boot in Linux
ELinks - text mode web browser
ext3grep - recover deleted files from an ext3 or ext4 file systems
extundelete - tool to help recover deleted files on ext3 file systems
file - determine file type
flashrom - identify, read, write, verify, erase flash chips
hdparm - get/set ATA/SATA drive parameters
hexedit - view and edit files in hexadecimal
lftp - command-line file transfer program
lm-sensors - Linux hardware monitoring
lshw - Hardware Lister
lsof - (LiSt Open Files) displays information about files open to processes
lspci - lists PCI buses and devices in the system
lsscsi - lists information about SCSI devices
lsusb - lists USB devices
lzip - gzip-like command line tool which uses LZMA compression
mdadm - manage MD devices, aka Linux Software Raid
Midnight Commander - file manager
multipath-tools - used to drive the Device Mapper multipathing driver
myrescue - rescue still-readable data from a damaged harddisk
nano - editor aimed to replace Pico
Nwipe - run the DBAN dwipe command outside of DBAN
openSSH - encrypt sessions using the SSH protocol
openSSL - open source implementation of the SSL and TLS protocols
partclone - a project similar to the well-known backup utility
partimage - utility which saves partitions to an image file
PhotoRec - digital photo recovery
pigz - parallel implementation of gzip that exploits multiple processors & cores
pmount - permits removable device mounting without matching /etc/fstab entry
pv - monitors the progress of data through a pipeline
RP-PPPoE - PPPoE client for Linux to connect to PPPoE service providers
rsync - fast incremental file transfer
rTorrent - text-based ncurses BitTorrent client
safecopy - data recovery tool
Scrounge NTFS - data recovery program for NTFS
sdparm - outputs and modifies SCSI device parameters
shred - securely delete a file
smartctl - control and monitor utility for SMART disks
stress - simple workload generator
TestDisk - partition scanner and disk recovery tool
TightVNC-viewer - remote control software package for connecting to a vnc server
UDPcast - transfer tool that can multicast data on a LAN
unarj - program used to uncompress .arj format archives
wpa_supplicant - implementation of an IEEE 802.11i supplicant
wipe - secure, file wiping utility